Ben: Distros like Ubuntu (and Fedora, which I use) are targeted more at the Desktop market, considering how the packages are updated and installed, with enough binary data to be compatible for thousands of configurations, instead of -just- yours.
Bryan: Consider something like Gentoo[1] or Slackware[2] for Server needs, since the overhead is lightweight and the packages are optimized for your exact machine specs (you'll have to do a lot of compiling for that) - the speed improvement is worth investigating.
[1] -
http://www.gentoo.org/[2] -
http://www.slackware.com/
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